/*
 * hdmap.h
 *
 *  Created on: Oct 17, 2013
 *      Author: jiang
 */

#ifndef HDMAP_H_
#define HDMAP_H_

#include "bwtaln.h"

typedef struct {
	int op;
} hdrmap_op;

#ifdef __cplusplus
extern "C" {
#endif

void hdrmap_map_core(const char *prefix, const char *fn_fa, const gap_opt_t  *opt);
int hdrmap_map(int argc, char *argv[]);


#ifdef __cplusplus
}
#endif


#endif /* HDMAP_H_ */
